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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs68188794 chr6:28080777 T/C ZFP57 chr6:29640169-29648887:- 0.94 9.04 3.94E-18 Box Plot
THCA rs6819690 chr4:61516568 A/G SCLY chr2:238969530-239008054:+ 0.46 6 3.92E-9 Box Plot
THCA rs6822415 chr4:161768930 A/G HIST1H2AC chr6:26124373-26139344:+ 0.6 5.97 4.69E-9 Box Plot
THCA rs6824353 chr4:150687720 T/G B4GALT4 chr3:118930579-118959950:- -0.66 -6.01 3.58E-9 Box Plot
THCA rs6825049 chr4:173876271 A/G GALNTL6 chr4:172733405-173962710:+ 0.51 11.83 1.76E-28 Box Plot
THCA rs683180 chr11:48463949 A/G FOLH1B chr11:89372395-89431886:+ -0.41 -6.09 2.33E-9 Box Plot
THCA rs6844803 chr4:150729841 A/G B4GALT4 chr3:118930579-118959950:- -0.67 -5.94 5.65E-9 Box Plot
THCA rs684813 chr11:77494754 G/A INTS4L1 chr7:64601603-64694600:+ 0.63 9.22 9.32E-19 Box Plot
THCA rs6850456 chr4:164969494 T/C FOXJ2 chr12:8185299-8208099:+ -0.26 -6.02 3.41E-9 Box Plot
THCA rs6852027 chr4:150753897 A/C B4GALT4 chr3:118930579-118959950:- -0.67 -6.03 3.22E-9 Box Plot
THCA rs685251 chr17:15572653 G/A ZNF286B chr17:18561742-18585575:- 0.68 13.13 7.29E-34 Box Plot
THCA rs685474 chr11:77567681 C/T INTS4L1 chr7:64601603-64694600:+ 0.43 7.75 5.63E-14 Box Plot
THCA rs685789 chr11:49241228 G/A FOLH1B chr11:89372395-89431886:+ 0.38 6.63 9.35E-11 Box Plot
THCA rs6858973 chr5:49627226 A/G LOC647121 chr1:121260910-121313686:+ 0.36 7.83 3.09E-14 Box Plot
THCA rs6860200 chr5:45440343 G/T LOC647121 chr1:121260910-121313686:+ 0.35 7.34 9.38E-13 Box Plot